Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs2114869 | chr12:9808426 | T/C | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs2125876 | chr3:53750266 | C/G | 1.25E-8 | 66 | 27.9 | 27.63 | 12.33 | KM Plot |
UVM | rs2162657 | chr12:9811049 | T/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs2182967 | chr20:30339385 | C/G | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs2307358 | chr2:201785657 | T/C | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs2307362 | chr2:201785837 | A/G | 2.98E-7 | 67 | 1.27 | 27.9 | 24.77 | KM Plot |
UVM | rs2359204 | chr3:53749740 | C/G | 1.25E-8 | 66 | 27.9 | 27.63 | 12.33 | KM Plot |
UVM | rs2412524 | chr15:40793261 | G/T | 0.000317 | 67 | 27.23 | 27.37 | 16.78 | KM Plot |
UVM | rs28493909 | chr7:151121040 | A/G | 0.00011 | 67 | 26.98 | 24.45 | 7.6 | KM Plot |
UVM | rs28763881 | chr20:30420059 | C/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs3199045 | chr12:132621375 | A/G | 4.29E-7 | 67 | 27.92 | 24.87 | 0.73 | KM Plot |
UVM | rs34040005 | chr2:239021538 | G/A | 4.67E-5 | 67 | 27.37 | 24.6 | 1.18 | KM Plot |
UVM | rs34088794 | chr15:40665420 | G/A | 5.12E-7 | 66 | 26.55 | 24.87 | 1.27 | KM Plot |
UVM | rs34303240 | chr15:40870895 | T/C | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |
UVM | rs34323946 | chr12:9760190 | C/G | 0.00014 | 66 | 27.37 | 21.8 | 7.6 | KM Plot |